NAME

GenOO::Junction - A junction (eg exon-exon) object with features

SYNOPSIS

# This class represents the connection of two genomic regions in its
# simplest form. It basically only contains the connecting genomic positions

# To instantiate
my $junction = GenOO::Junction->new(
    species      => undef,
    strand       => undef,
    chromosome   => undef,
    start        => undef,
    stop         => undef,
});

DESCRIPTION

The GenOO::Junction class descibes a genomic junction.

EXAMPLES

my $junction = GenOO::Junction->new(
    species     => transcript->species,
    strand      => transcript->strand,
    chromosome  => transcript->chromosome,
    start       => exon1->stop,
    stop        => exon2->start,
);