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Convert-Pheno-0.20
River stage zero No dependents

Changes for version 0.20 - 2024-05-23

  • Encapsulated Default values in Default.pm
  • Refactored REDCap.pm code to be used with CSV.pm
  • Implemented basic <csv2bff> and <csv2pxf> conversions (experimental)
  • Mapping file changes: o Required properties in mappind file now only are 'project','id' and 'sex' o Added project.baselineFieldsToPropagate o Added new properties along with their schemas, This is the current list:
    • age,ageOfOnset,assignTermIdFromHeader,bodySite,dateOfProcedure,dictionary,drugDose,drugUnit,duration,durationUnit,familyHistory,fields,mapping,procedureCodeLabel,selector,terminology,unit
  • Fixed issue with hpo.db that had leading and trailing white spaces in columns

Documentation

convert-pheno
A script to interconvert common data models for phenotypic data

Modules

Convert::Pheno
A module to interconvert common data models for phenotypic data

Provides

Convert::Pheno::BFF
in lib/Convert/Pheno/BFF.pm
Convert::Pheno::CDISC
in lib/Convert/Pheno/CDISC.pm
Convert::Pheno::CSV
in lib/Convert/Pheno/CSV.pm
Convert::Pheno::Default
in lib/Convert/Pheno/Default.pm
Convert::Pheno::IO::CSVHandler
in lib/Convert/Pheno/IO/CSVHandler.pm
Convert::Pheno::IO::FileIO
in lib/Convert/Pheno/IO/FileIO.pm
Convert::Pheno::Mapping
in lib/Convert/Pheno/Mapping.pm
Convert::Pheno::OMOP
in lib/Convert/Pheno/OMOP.pm
Convert::Pheno::PXF
in lib/Convert/Pheno/PXF.pm
Convert::Pheno::RDF
in lib/Convert/Pheno/RDF.pm
Convert::Pheno::REDCap
in lib/Convert/Pheno/REDCap.pm
Convert::Pheno::SQLite
in lib/Convert/Pheno/SQLite.pm
Convert::Pheno::Schema
in lib/Convert/Pheno/Schema.pm

Other files