NAME

BS_PCRTagDumper.pl

VERSION

Version 2.00

DESCRIPTION

This utility creates a list of PCR Tags from a chromosome.  It will alert when
 the sequence for a synthetic tag is not what was expected; this usually means
 that a subsequent edit modified the sequence without considerately updating
 the tags annotation.

ARGUMENTS

Required arguments:

-C, --CHROMOSOME : The chromosome to be parsed

Optional arguments:

 -SC,  --SCOPE : [seg, chrom (def)] How much sequence to parse for tags.
                 seg requires STARTPOS and STOPPOS.
 -STA, --STARTPOS : The first base for parsing; ignored unless SCOPE = seg
 -STO, --STOPPOS  : The last base for parsing; ignored unless SCOPE = seg
 -OU,  --OUTPUT   : [html, txt (def)] Format of the output
 -h,   --help : Display this message