NAME
Bioinfo::PBS - my perl module and CLIs for Biology
VERSION
version 0.1.1
SYNOPSIS
use Bioinfo::PBS;
my $para = {
cpu => 2,
name => 'blast',
cmd => 'ls -alh; pwd',
};
my $pbs_obj = Bioinfo::PBS->new($para);
$pbs_obj->qsub;DESCRIPTION
This module is created to simplify process of task submitting in PBS system, and waiting for the finish of multiple tasks.
ATTRIBUTES
cpu
cpu number that will apply
name
prefix of output of STANDARD and ERR
cmd
the command that will be submitted to cluster
path
the path that cmd will execute in
job_id
the job id of qsub
priority
the priority during the process of Batch submmit in Queue
METHODS
get_sh
get shell file that will used in qsub
qsub
submit the program to cluster
wait
wait until the program finished in cluster
job_stat
get the status of job. 0 will be return if the job has completed
AUTHOR
Yan Xueqing <yanxueqing621@163.com>
COPYRIGHT AND LICENSE
This software is copyright (c) 2017 by Yan Xueqing.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.