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Bioinfo-0.1.2
River stage zero No dependents

Changes for version 0.1.2

  • Change: 77dd52b5912e84ed4529b452d632f406e953f2e7 Author: Yan Xueqing <yanxueqing621@163.com> Date : 2017-08-18 22:29:53 +0000
    • Removed execute mod of PBS
  • Change: 60f9a2041c1f3cb6dd672f105f0d5b5b5e622a36 Author: Yan Xueqing <yanxueqing621@163.com> Date : 2017-08-18 22:28:51 +0000
    • Added ParseXML and SplitSubmit module to subcommand of Blast
  • Change: cb6f0c2a3f51866b7fff05ba6875d7c51883d6b7 Author: Yan Xueqing <yanxueqing621@163.com> Date : 2017-08-11 23:53:51 +0000
    • Added control of paralell task number for PBS::Queue module
  • Change: 4b3c1783598cbc2342ea257c489648b8dd9ea124 Author: Yan Xueqing <yanxueqing621@163.com> Date : 2017-07-29 18:44:21 +0000
    • Modified name of output of blast
  • Change: dab2566518b39c1338a0841cc6d9530522996f17 Author: Yan Xueqing <yanxueqing621@163.com> Date : 2017-07-28 19:06:36 +0000
    • Fixed SplitBlast bug

Documentation

biotools
a bioinformatics toolkit that I used often

Modules

Bioinfo
my perl module and CLIs for Biology
Bioinfo::App
my perl module and CLIs for Biology
Bioinfo::App::Cmd::Blast
various operator related to Blast+
Bioinfo::App::Cmd::Blast::Cmd::ParseXML
parse XML file of blast+(with outfmt=5) into tabular format
Bioinfo::App::Cmd::Blast::Cmd::SplitSubmit
submit blast after splitting a fasta file into multiple files;
Bioinfo::App::Cmd::Fasta
my perl module and CLIs for Biology
Bioinfo::App::Cmd::Fasta::Cmd::Split
my perl module and CLIs for Biology
Bioinfo::App::Cmd::Fasta::Cmd::SplitBlast
my perl module and CLIs for Biology
Bioinfo::Fasta
get one or more sequences from a FASTA file quickly.
Bioinfo::PBS
my perl module and CLIs for Biology
Bioinfo::PBS::Queue
used to submit a batch of task to Torque cluster

Other files