NAME

mergeabi - Merge forward and reverse ABI files into a single sequence

VERSION

version 1.0.1

Merge forward and reverse ABI files into a single sequence

mergeabi [options] --for <forward.fastq> --rev <reverse.fastq>

-1, --for <forward.fastq>: Forward read in .ab1 format
-r, --rev <reverse.fastq>: Reverse read in .ab1 format
-n, --name <name>: Output sequence name (otherwise sample name from forward chromatogram)
-q, --min-qual <min_qual>: Minimum quality score to keep a base
-b, --bad-bases <bad_bases>: Maximum number of bad bases to keep a base
-w, --wnd <wnd>: Window size to use for quality score calculation
-s, --min-score <min_score>: Minimum alignment score to keep a base
-i, --info: Add information about the merge to the header

Andrea Telatin <andrea@telatin.com>

This is free software, licensed under:

The MIT (X11) License

To install FASTX::Abi, copy and paste the appropriate command in to your terminal.

cpanm FASTX::Abi

perl -MCPAN -e shell
install FASTX::Abi

For more information on module installation, please visit the detailed CPAN module installation guide.

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