Changes for version 0.88 - 2020-04-13

  • getFileFormat() also supports gzipped files
  • FASTX::PE strips /1 /2 _1 _2 _R1 _R2 from interleaved read names
  • Preliminary release of FASTX::ScriptHelper
  • Bug fixes

Documentation

fqc
A FASTA/FASTQ sequence counter
A demo implementation to filter fastx files by length

Modules

A Paired-End FASTQ files reader, based on FASTX::Reader.
A lightweight module to parse FASTA and FASTQ files, supporting compressed files and paired-ends.
Shared routines for binaries using FASTX::Reader and FASTX::PE.

Provides

in lib/FASTX/ScriptHelper.pm