NAME
Reader.pl and othe scripts - Demo scripts implementing FASTX::Reader
USAGE
reader.pl FILE1 FILE2 ... FILE{n}If no arguments are supplied, it will parse two test files contained in the script directory
NOTES
The printed sequences can be slightly different from the input file as the header will be {name}{space}{comments}, but any white space (including a tab) could be the comment separator
OTHER SAMPLE SCRIPTS
The scripts directory contains scripts to test the library:
- Reader.pl
-
This script: a minimal implementation of the FASTX::Reader module to show how to parse a FASTA/FASTQ files. It will work with demo files if no arguments are supplied.
- FastqReader.pl
-
A script to read and print sequences from FASTQ files using the faster
getFastqRead()method. It will work with demo files if no arguments are supplied. - Counter.pl
-
A script to count the number of sequences in both FASTA/FASTQ files. It will work with demo files if no arguments are supplied.
- Stdin.pl
-
A script to print sequences from STDIN.
WEBSITES
- https://github.com/telatin/FASTQ-Parser
-
The GitHub repository for this module
- https://metacpan.org/pod/FASTX::Reader
-
The MetaCPAN page for this module