/ 
Qiime2-Reader-0.10.0
River stage zero No dependents
/ scripts/qzoom.pl

NAME

qzoom.pl - a helper utility to extract data from Qiime2 artifact

AUTHOR

Andrea Telatin <andrea@telatin.com>

SYNOPSIS

qzoom.pl [options] <artifact1.qza/v> [<artifact2.qza ...]

OPTIONS

Main Actions

    -i, --info

    Print artifact citation to STDOUT or to file, is a filepath is provided. Enabled by default if no --cite or --extract are defined.

    -c, --cite

    Print artifact citation to STDOUT or to file. Specify -b FILE to save it.

    -x, --extract

    Print the list of files in the 'data' directory. If a OUTDIR is provided, extract the content of the 'data' directory (i.e. the actual output of the artifact). Will create the directory if not found. Will overwrite files in the directory.

    -d, --data

    List all the files contained in the ./data directory of the artifacts

Other parameters

    -o, --outdir OUTDIR

    Directory where to extract files (default: ./), to use with -x, --extract.

    -f, --force-ext

    Try to parse also non .qza or .qzv files

    -b, --bibtex FILE

    Save citations to a file (append), to use with -c, --cite.

    -r, --rename

    Rename the content of the artifact to {artifactbasename}.{ext}. Used with -x will extract dna-sequences.fasta from dada2repseq.qza as dada2repseq.fasta. Only works with single file artifacts.

    --verbose

    Print verbose output.

BUGS

Please report them to <andrea@telatin.com>

Copyright (C) 2019 Andrea Telatin

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.