NAME
qzoom.pl - a helper utility to extract data from Qiime2 artifact
AUTHOR
Andrea Telatin <andrea@telatin.com>
SYNOPSIS
qzoom.pl [options] <artifact1.qza/v> [<artifact2.qza ...]
OPTIONS
Main Actions
-i, --info
Print artifact citation to STDOUT or to file, is a filepath is provided. Enabled by default if no --cite or --extract are defined.
-c, --cite
Print artifact citation to STDOUT or to file. Specify -b FILE to save it.
-x, --extract
Print the list of files in the 'data' directory. If a OUTDIR is provided, extract the content of the 'data' directory (i.e. the actual output of the artifact). Will create the directory if not found. Will overwrite files in the directory.
-d, --data
List all the files contained in the ./data directory of the artifacts
Other parameters
-o, --outdir OUTDIR
Directory where to extract files (default: ./), to use with -x, --extract.
-f, --force-ext
Try to parse also non .qza or .qzv files
-b, --bibtex FILE
Save citations to a file (append), to use with -c, --cite.
-r, --rename
Rename the content of the artifact to {artifactbasename}.{ext}. Used with -x will extract dna-sequences.fasta from dada2repseq.qza as dada2repseq.fasta. Only works with single file artifacts.
--verbose
Print verbose output.
BUGS
Please report them to <andrea@telatin.com>
COPYRIGHT
Copyright (C) 2019 Andrea Telatin
This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.