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Bio-Chado-Schema-0.06302
River stage one • 3 direct dependents • 3 total dependents
/ Bio::Chado::Schema::Sequence::FeatureSynonym

NAME

Bio::Chado::Schema::Sequence::FeatureSynonym

NAME

Bio::Chado::Schema::Sequence::FeatureSynonym - Linking table between feature and synonym.

ACCESSORS

feature_synonym_id

data_type: 'integer'
is_auto_increment: 1
is_nullable: 0
sequence: 'feature_synonym_feature_synonym_id_seq'

synonym_id

data_type: 'integer'
is_foreign_key: 1
is_nullable: 0

feature_id

data_type: 'integer'
is_foreign_key: 1
is_nullable: 0

pub_id

data_type: 'integer'
is_foreign_key: 1
is_nullable: 0

The pub_id link is for relating the usage of a given synonym to the publication in which it was used.

is_current

data_type: 'boolean'
default_value: false
is_nullable: 0

The is_current boolean indicates whether the linked synonym is the current -official- symbol for the linked feature.

is_internal

data_type: 'boolean'
default_value: false
is_nullable: 0

Typically a synonym exists so that somebody querying the db with an obsolete name can find the object theyre looking for (under its current name. If the synonym has been used publicly and deliberately (e.g. in a paper), it may also be listed in reports as a synonym. If the synonym was not used deliberately (e.g. there was a typo which went public), then the is_internal boolean may be set to -true- so that it is known that the synonym is -internal- and should be queryable but should not be listed in reports as a valid synonym.

RELATIONS

feature

Type: belongs_to

Related object: Bio::Chado::Schema::Sequence::Feature

pub

Type: belongs_to

Related object: Bio::Chado::Schema::Pub::Pub

synonym

Type: belongs_to

Related object: Bio::Chado::Schema::Sequence::Synonym

AUTHOR

Robert Buels <rbuels@cpan.org>

COPYRIGHT AND LICENSE

This software is copyright (c) 2009 by Robert Buels.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.