/ 
Bio-Chado-Schema-0.08200
River stage one • 3 direct dependents • 3 total dependents
/ Bio::Chado::Schema::Result::Companalysis::Analysis

NAME

Bio::Chado::Schema::Result::Companalysis::Analysis

DESCRIPTION

An analysis is a particular type of a computational analysis; it may be a blast of one sequence against another, or an all by all blast, or a different kind of analysis altogether. It is a single unit of computation.

NAME

Bio::Chado::Schema::Result::Companalysis::Analysis

ACCESSORS

analysis_id

data_type: 'integer'
is_auto_increment: 1
is_nullable: 0
sequence: 'analysis_analysis_id_seq'

name

data_type: 'varchar'
is_nullable: 1
size: 255

A way of grouping analyses. This should be a handy short identifier that can help people find an analysis they want. For instance "tRNAscan", "cDNA", "FlyPep", "SwissProt", and it should not be assumed to be unique. For instance, there may be lots of separate analyses done against a cDNA database.

description

data_type: 'text'
is_nullable: 1

program

data_type: 'varchar'
is_nullable: 0
size: 255

Program name, e.g. blastx, blastp, sim4, genscan.

programversion

data_type: 'varchar'
is_nullable: 0
size: 255

Version description, e.g. TBLASTX 2.0MP-WashU [09-Nov-2000].

algorithm

data_type: 'varchar'
is_nullable: 1
size: 255

Algorithm name, e.g. blast.

sourcename

data_type: 'varchar'
is_nullable: 1
size: 255

Source name, e.g. cDNA, SwissProt.

sourceversion

data_type: 'varchar'
is_nullable: 1
size: 255

sourceuri

data_type: 'text'
is_nullable: 1

This is an optional, permanent URL or URI for the source of the analysis. The idea is that someone could recreate the analysis directly by going to this URI and fetching the source data (e.g. the blast database, or the training model).

timeexecuted

data_type: 'timestamp'
default_value: current_timestamp
is_nullable: 0
original: {default_value => \"now()"}

RELATIONS

analysisfeatures

Type: has_many

Related object: Bio::Chado::Schema::Result::Companalysis::Analysisfeature

analysisprops

Type: has_many

Related object: Bio::Chado::Schema::Result::Companalysis::Analysisprop

phylotrees

Type: has_many

Related object: Bio::Chado::Schema::Result::Phylogeny::Phylotree

quantifications

Type: has_many

Related object: Bio::Chado::Schema::Result::Mage::Quantification

AUTHOR

Robert Buels <rbuels@cpan.org>

COPYRIGHT AND LICENSE

This software is copyright (c) 2011 by Robert Buels.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.