/ 
Bio-Chado-Schema-0.10000
/ Bio::Chado::Schema::Result::Phenotype::Phenotype

NAME

Bio::Chado::Schema::Result::Phenotype::Phenotype

DESCRIPTION

A phenotypic statement, or a single atomic phenotypic observation, is a controlled sentence describing observable effects of non-wild type function. E.g. Obs=eye, attribute=color, cvalue=red.

ACCESSORS

phenotype_id

data_type: 'integer'
is_auto_increment: 1
is_nullable: 0
sequence: 'phenotype_phenotype_id_seq'

uniquename

data_type: 'text'
is_nullable: 0

name

data_type: 'text'
is_nullable: 1

observable_id

data_type: 'integer'
is_foreign_key: 1
is_nullable: 1

The entity: e.g. anatomy_part, biological_process.

attr_id

data_type: 'integer'
is_foreign_key: 1
is_nullable: 1

Phenotypic attribute (quality, property, attribute, character) - drawn from PATO.

value

data_type: 'text'
is_nullable: 1

Value of attribute - unconstrained free text. Used only if cvalue_id is not appropriate.

cvalue_id

data_type: 'integer'
is_foreign_key: 1
is_nullable: 1

Phenotype attribute value (state).

assay_id

data_type: 'integer'
is_foreign_key: 1
is_nullable: 1

Evidence type.

RELATIONS

feature_phenotypes

Type: has_many

Related object: Bio::Chado::Schema::Result::Phenotype::FeaturePhenotype

nd_experiment_phenotypes

Type: has_many

Related object: Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentPhenotype

assay

Type: belongs_to

Related object: Bio::Chado::Schema::Result::Cv::Cvterm

attr

Type: belongs_to

Related object: Bio::Chado::Schema::Result::Cv::Cvterm

observable

Type: belongs_to

Related object: Bio::Chado::Schema::Result::Cv::Cvterm

cvalue

Type: belongs_to

Related object: Bio::Chado::Schema::Result::Cv::Cvterm

phenotype_comparison_phenotype1s

Type: has_many

Related object: Bio::Chado::Schema::Result::Genetic::PhenotypeComparison

phenotype_comparison_phenotype2s

Type: has_many

Related object: Bio::Chado::Schema::Result::Genetic::PhenotypeComparison

phenotype_cvterms

Type: has_many

Related object: Bio::Chado::Schema::Result::Phenotype::PhenotypeCvterm

phenotypeprops

Type: has_many

Related object: Bio::Chado::Schema::Result::Phenotype::Phenotypeprop

phenstatements

Type: has_many

Related object: Bio::Chado::Schema::Result::Genetic::Phenstatement