all_entities_Subsystem

Return all instances of the Subsystem entity.

A subsystem is a set of functional roles that have been annotated simultaneously (e.g., the roles present in a specific pathway), with an associated subsystem spreadsheet which encodes the fids in each genome that implement the functional roles in the subsystem.

Example:

all_entities_Subsystem -a 

would retrieve all entities of type Subsystem and include all fields in the entities in the output.

Related entities

The Subsystem entity has the following relationship links:

Describes Variant

Includes Role

IsInClass SubsystemClass

IsRelevantTo Diagram

IsSubInstanceOf Scenario

WasProvidedBy Source

Command-Line Options

-a

Return all fields.

-h

Display a list of the fields available for use.

-fields field-list

Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available:

version

curator

notes

description

usable

private

cluster_based

experimental

Output Format

The standard output is a tab-delimited file. It consists of the input file with an extra column added for each requested field. Input lines that cannot be extended are written to stderr.