all_entities_AlleleFrequency
Return all instances of the AlleleFrequency entity.
An allele frequency represents a summary of the major and minor allele frequencies for a position on a chromosome.
Example:
all_entities_AlleleFrequency -a would retrieve all entities of type AlleleFrequency and include all fields in the entities in the output.
Related entities
The AlleleFrequency entity has the following relationship links:
Command-Line Options
- -a
-
Return all fields.
- -h
-
Display a list of the fields available for use.
- -fields field-list
-
Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available:
- source_id
- position
- minor_AF
- minor_allele
- major_AF
- major_allele
- obs_unit_count
Output Format
The standard output is a tab-delimited file. It consists of the input file with an extra column added for each requested field. Input lines that cannot be extended are written to stderr.