all_entities_Compound
Return all instances of the Compound entity.
A compound is a chemical that participates in a reaction. Both ligands and reaction components are treated as compounds.
Example:
all_entities_Compound -a would retrieve all entities of type Compound and include all fields in the entities in the output.
Related entities
The Compound entity has the following relationship links:
- HasUsage BiomassCompound
- IsPresentIn Media
- IsShownOn Diagram
- IsTerminusFor Scenario
- ParticipatesAs Reagent
- UsesAliasForCompound Source
Command-Line Options
- -a
-
Return all fields.
- -h
-
Display a list of the fields available for use.
- -fields field-list
-
Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available:
- label
- abbr
- msid
- ubiquitous
- mod_date
- uncharged_formula
- formula
- mass
Output Format
The standard output is a tab-delimited file. It consists of the input file with an extra column added for each requested field. Input lines that cannot be extended are written to stderr.