all_entities_CoregulatedSet
Return all instances of the CoregulatedSet entity.
We need to represent sets of genes that are coregulated via some regulatory mechanism. In particular, we wish to represent genes that are coregulated using transcription binding sites and corresponding transcription regulatory proteins. We represent a coregulated set (which may, or may not, be considered a regulon) using CoregulatedSet.
Example:
all_entities_CoregulatedSet -a would retrieve all entities of type CoregulatedSet and include all fields in the entities in the output.
Related entities
The CoregulatedSet entity has the following relationship links:
Command-Line Options
- -a
-
Return all fields.
- -h
-
Display a list of the fields available for use.
- -fields field-list
-
Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available:
- source_id
- binding_location
Output Format
The standard output is a tab-delimited file. It consists of the input file with an extra column added for each requested field. Input lines that cannot be extended are written to stderr.