all_entities_Reagent
Return all instances of the Reagent entity.
This entity represents a compound as it is used by a specific reaction. A reaction involves many compounds, and a compound can be involved in many reactions. The reagent describes the use of the compound by a specific reaction.
Example:
all_entities_Reagent -a would retrieve all entities of type Reagent and include all fields in the entities in the output.
Related entities
The Reagent entity has the following relationship links:
Command-Line Options
- -a
-
Return all fields.
- -h
-
Display a list of the fields available for use.
- -fields field-list
-
Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available:
- stoichiometry
- cofactor
- compartment_index
- transport_coefficient
Output Format
The standard output is a tab-delimited file. It consists of the input file with an extra column added for each requested field. Input lines that cannot be extended are written to stderr.