all_entities_TaxonomicGrouping
Return all instances of the TaxonomicGrouping entity.
We associate with most genomes a "taxonomy" based on the NCBI taxonomy. This includes, for each genome, a list of ever larger taxonomic groups.
Example:
all_entities_TaxonomicGrouping -a would retrieve all entities of type TaxonomicGrouping and include all fields in the entities in the output.
Related entities
The TaxonomicGrouping entity has the following relationship links:
- IsGroupFor TaxonomicGrouping
- IsInGroup TaxonomicGrouping
- IsRepresentedBy ObservationalUnit
- IsTaxonomyOf Genome
Command-Line Options
- -a
-
Return all fields.
- -h
-
Display a list of the fields available for use.
- -fields field-list
-
Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available:
- domain
- scientific_name
- alias
Output Format
The standard output is a tab-delimited file. It consists of the input file with an extra column added for each requested field. Input lines that cannot be extended are written to stderr.