query_entity_AlleleFrequency

Query the entity AlleleFrequency.

An allele frequency represents a summary of the major and minor allele frequencies for a position on a chromosome.

Example:

query_entity_AlleleFrequency -a 

Related entities

The AlleleFrequency entity has the following relationship links:

Summarizes Contig

Command-Line Options

-is field,value

Limit the results to entities where the given field has the given value.

-like field,value

Limit the results to entities where the given field is LIKE (in the sql sense) the given value.

-op operator,field,value

Limit the results to entities where the given field is related to the given value based on the given operator.

The operators supported are as follows. We provide text based alternatives to the comparison operators so that extra quoting is not required to keep the command-line shell from confusing them with shell I/O redirection operators.

< or lt

> or gt

<= or le

>= or ge

=

LIKE

-a

Return all fields.

-h

Display a list of the fields available for use.

-fields field-list

Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available:

source_id

position

minor_AF

minor_allele

major_AF

major_allele

obs_unit_count

Output Format

The standard output is a tab-delimited file containing a column for each requested field.