query_entity_Compound
Query the entity Compound.
A compound is a chemical that participates in a reaction. Both ligands and reaction components are treated as compounds.
Example:
query_entity_Compound -a Related entities
The Compound entity has the following relationship links:
- HasUsage BiomassCompound
- IsPresentIn Media
- IsShownOn Diagram
- IsTerminusFor Scenario
- ParticipatesAs Reagent
- UsesAliasForCompound Source
Command-Line Options
- -is field,value
-
Limit the results to entities where the given field has the given value.
- -like field,value
-
Limit the results to entities where the given field is LIKE (in the sql sense) the given value.
- -op operator,field,value
-
Limit the results to entities where the given field is related to the given value based on the given operator.
The operators supported are as follows. We provide text based alternatives to the comparison operators so that extra quoting is not required to keep the command-line shell from confusing them with shell I/O redirection operators.
- -a
-
Return all fields.
- -h
-
Display a list of the fields available for use.
- -fields field-list
-
Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available:
- label
- abbr
- msid
- ubiquitous
- mod_date
- uncharged_formula
- formula
- mass
Output Format
The standard output is a tab-delimited file containing a column for each requested field.