query_entity_CoregulatedSet
Query the entity CoregulatedSet.
We need to represent sets of genes that are coregulated via some regulatory mechanism. In particular, we wish to represent genes that are coregulated using transcription binding sites and corresponding transcription regulatory proteins. We represent a coregulated set (which may, or may not, be considered a regulon) using CoregulatedSet.
Example:
query_entity_CoregulatedSet -a Related entities
The CoregulatedSet entity has the following relationship links:
Command-Line Options
- -is field,value
-
Limit the results to entities where the given field has the given value.
- -like field,value
-
Limit the results to entities where the given field is LIKE (in the sql sense) the given value.
- -op operator,field,value
-
Limit the results to entities where the given field is related to the given value based on the given operator.
The operators supported are as follows. We provide text based alternatives to the comparison operators so that extra quoting is not required to keep the command-line shell from confusing them with shell I/O redirection operators.
- -a
-
Return all fields.
- -h
-
Display a list of the fields available for use.
- -fields field-list
-
Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available:
- source_id
- binding_location
Output Format
The standard output is a tab-delimited file containing a column for each requested field.