query_entity_ProteinSequence
Query the entity ProteinSequence.
We use the concept of ProteinSequence as an amino acid string with an associated MD5 value. It is easy to access the set of Features that relate to a ProteinSequence. While function is still associated with Features (and may be for some time), publications are associated with ProteinSequences (and the inferred impact on Features is through the relationship connecting ProteinSequences to Features).
Example:
query_entity_ProteinSequence -a Related entities
The ProteinSequence entity has the following relationship links:
- HasAssertedFunctionFrom Source
- IsATopicOf Publication
- IsAlignedBy AlignmentTree
- IsProjectedOnto ProteinSequence
- IsProteinFor Feature
- IsProteinMemberOf Family
- ProjectsOnto ProteinSequence
Command-Line Options
- -is field,value
-
Limit the results to entities where the given field has the given value.
- -like field,value
-
Limit the results to entities where the given field is LIKE (in the sql sense) the given value.
- -op operator,field,value
-
Limit the results to entities where the given field is related to the given value based on the given operator.
The operators supported are as follows. We provide text based alternatives to the comparison operators so that extra quoting is not required to keep the command-line shell from confusing them with shell I/O redirection operators.
- -a
-
Return all fields.
- -h
-
Display a list of the fields available for use.
- -fields field-list
-
Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available:
- sequence
Output Format
The standard output is a tab-delimited file containing a column for each requested field.