query_entity_Subsystem
Query the entity Subsystem.
A subsystem is a set of functional roles that have been annotated simultaneously (e.g., the roles present in a specific pathway), with an associated subsystem spreadsheet which encodes the fids in each genome that implement the functional roles in the subsystem.
Example:
query_entity_Subsystem -a Related entities
The Subsystem entity has the following relationship links:
- Describes Variant
- Includes Role
- IsInClass SubsystemClass
- IsRelevantTo Diagram
- IsSubInstanceOf Scenario
- WasProvidedBy Source
Command-Line Options
- -is field,value
-
Limit the results to entities where the given field has the given value.
- -like field,value
-
Limit the results to entities where the given field is LIKE (in the sql sense) the given value.
- -op operator,field,value
-
Limit the results to entities where the given field is related to the given value based on the given operator.
The operators supported are as follows. We provide text based alternatives to the comparison operators so that extra quoting is not required to keep the command-line shell from confusing them with shell I/O redirection operators.
- -a
-
Return all fields.
- -h
-
Display a list of the fields available for use.
- -fields field-list
-
Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available:
- version
- curator
- notes
- description
- usable
- private
- cluster_based
- experimental
Output Format
The standard output is a tab-delimited file containing a column for each requested field.