query_entity_TaxonomicGrouping

Query the entity TaxonomicGrouping.

We associate with most genomes a "taxonomy" based on the NCBI taxonomy. This includes, for each genome, a list of ever larger taxonomic groups.

Example:

query_entity_TaxonomicGrouping -a 

Related entities

The TaxonomicGrouping entity has the following relationship links:

IsGroupFor TaxonomicGrouping

IsInGroup TaxonomicGrouping

IsRepresentedBy ObservationalUnit

IsTaxonomyOf Genome

Command-Line Options

-is field,value

Limit the results to entities where the given field has the given value.

-like field,value

Limit the results to entities where the given field is LIKE (in the sql sense) the given value.

-op operator,field,value

Limit the results to entities where the given field is related to the given value based on the given operator.

The operators supported are as follows. We provide text based alternatives to the comparison operators so that extra quoting is not required to keep the command-line shell from confusing them with shell I/O redirection operators.

< or lt

> or gt

<= or le

>= or ge

=

LIKE

-a

Return all fields.

-h

Display a list of the fields available for use.

-fields field-list

Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available:

domain

hidden

scientific_name

alias

Output Format

The standard output is a tab-delimited file containing a column for each requested field.