Bio-Das-ProServer-2.070

Modules

Bio::Das::ProServer

Bio::Das::ProServer::Config

configuration parsing and hooks

Bio::Das::ProServer::SourceAdaptor

base class for sources

Bio::Das::ProServer::SourceAdaptor::Transport::bioseqio

A ProServer transport module that works off any flat file that Bio::SeqIO supports.

Bio::Das::ProServer::SourceAdaptor::Transport::ensembl

Bio::Das::ProServer::SourceAdaptor::Transport::generic

A generic transport layer for deriving others from

Bio::Das::ProServer::SourceAdaptor::Transport::wgetz

A ProServer transport module for wgetz (SRS web access)

Bio::Das::ProServer::SourceAdaptor::all_in_group

Bio::Das::ProServer::SourceAdaptor::bioseq

A ProServer source adaptor for converting Bio::Seq objects into DAS features. See also "Transport/bioseqio.pm".

Bio::Das::ProServer::SourceAdaptor::cache

Bio::Das::ProServer::SourceAdaptor::gtfdb

Builds DAS features for Human Spectral Genomics cloneset from mapping database

Bio::Das::ProServer::SourceAdaptor::pdbStructure

Builds DAS structures from the WTSI instance of PDB database

Bio::Das::ProServer::SourceAdaptor::simple_interaction

Bio::Das::ProServer::SourceAdaptor::simple_volmap

Bio::Das::ProServer::SourceHydra

A runtime factory for B::D::P::SourceAdaptors

Bio::Das::ProServer::SourceHydra::dbi

A database-backed implementation of B::D::P::SourceHydra

Bio::Das::ProServer::SourceHydra::simplescoreh_db

hydra broker for simplescore_db databases

Provides

Bio::Das::ProServer::SourceAdaptor::CNVDB

in lib/Bio/Das/ProServer/SourceAdaptor/CNVDB.pm

Bio::Das::ProServer::SourceAdaptor::Transport::csv

in lib/Bio/Das/ProServer/SourceAdaptor/Transport/csv.pm

Bio::Das::ProServer::SourceAdaptor::Transport::dbi

in lib/Bio/Das/ProServer/SourceAdaptor/Transport/dbi.pm

Bio::Das::ProServer::SourceAdaptor::Transport::file

in lib/Bio/Das/ProServer/SourceAdaptor/Transport/file.pm

Bio::Das::ProServer::SourceAdaptor::Transport::getz

in lib/Bio/Das/ProServer/SourceAdaptor/Transport/getz.pm

Bio::Das::ProServer::SourceAdaptor::Transport::mole

in lib/Bio/Das/ProServer/SourceAdaptor/Transport/mole.pm

Bio::Das::ProServer::SourceAdaptor::Transport::oracle

in lib/Bio/Das/ProServer/SourceAdaptor/Transport/oracle.pm

Bio::Das::ProServer::SourceAdaptor::Transport::pfetch

in lib/Bio/Das/ProServer/SourceAdaptor/Transport/pfetch.pm

Bio::Das::ProServer::SourceAdaptor::agp

in lib/Bio/Das/ProServer/SourceAdaptor/agp.pm

Bio::Das::ProServer::SourceAdaptor::cegg_dbi

in lib/Bio/Das/ProServer/SourceAdaptor/cegg_dbi.pm

Bio::Das::ProServer::SourceAdaptor::chori_243

in lib/Bio/Das/ProServer/SourceAdaptor/chori_243.pm

Bio::Das::ProServer::SourceAdaptor::cosmic

in lib/Bio/Das/ProServer/SourceAdaptor/cosmic.pm

Bio::Das::ProServer::SourceAdaptor::cosmic_genomic

in lib/Bio/Das/ProServer/SourceAdaptor/cosmic_genomic.pm

Bio::Das::ProServer::SourceAdaptor::cosmic_ncbi_35

in lib/Bio/Das/ProServer/SourceAdaptor/cosmic_ncbi_35.pm

Bio::Das::ProServer::SourceAdaptor::cosmic_ncbi_36_mutations

in lib/Bio/Das/ProServer/SourceAdaptor/cosmic_ncbi_36_mutations.pm

Bio::Das::ProServer::SourceAdaptor::cosmic_ncbi_36_transcripts

in lib/Bio/Das/ProServer/SourceAdaptor/cosmic_ncbi_36_transcripts.pm

Bio::Das::ProServer::SourceAdaptor::decipher

in lib/Bio/Das/ProServer/SourceAdaptor/decipher.pm

Bio::Das::ProServer::SourceAdaptor::decipher_cnv

in lib/Bio/Das/ProServer/SourceAdaptor/decipher_cnv.pm

Bio::Das::ProServer::SourceAdaptor::ens_genexrefs

in lib/Bio/Das/ProServer/SourceAdaptor/ens_genexrefs.pm

Bio::Das::ProServer::SourceAdaptor::ens_ncbi_35_morbid

in lib/Bio/Das/ProServer/SourceAdaptor/ens_ncbi_35_morbid.pm

Bio::Das::ProServer::SourceAdaptor::ensembl_upload

in lib/Bio/Das/ProServer/SourceAdaptor/ensembl_upload.pm

Bio::Das::ProServer::SourceAdaptor::ensgenes

in lib/Bio/Das/ProServer/SourceAdaptor/ensgenes.pm

Bio::Das::ProServer::SourceAdaptor::gene_pro_db

in lib/Bio/Das/ProServer/SourceAdaptor/gene_pro_db.pm

Bio::Das::ProServer::SourceAdaptor::genetarget_db

in lib/Bio/Das/ProServer/SourceAdaptor/genetarget_db.pm

Bio::Das::ProServer::SourceAdaptor::genetrap

in lib/Bio/Das/ProServer/SourceAdaptor/genetrap.pm

Bio::Das::ProServer::SourceAdaptor::grouped_db

in lib/Bio/Das/ProServer/SourceAdaptor/grouped_db.pm

Bio::Das::ProServer::SourceAdaptor::hs34_20_clone

in lib/Bio/Das/ProServer/SourceAdaptor/hs34_20_clone.pm

Bio::Das::ProServer::SourceAdaptor::hs35_clone

in lib/Bio/Das/ProServer/SourceAdaptor/hs35_clone.pm

Bio::Das::ProServer::SourceAdaptor::hugo

in lib/Bio/Das/ProServer/SourceAdaptor/hugo.pm

Bio::Das::ProServer::SourceAdaptor::indel_Zv4

in lib/Bio/Das/ProServer/SourceAdaptor/indel_Zv4.pm

Bio::Das::ProServer::SourceAdaptor::indel_Zv5

in lib/Bio/Das/ProServer/SourceAdaptor/indel_Zv5.pm

Bio::Das::ProServer::SourceAdaptor::interpro_mole

in lib/Bio/Das/ProServer/SourceAdaptor/interpro_mole.pm

Bio::Das::ProServer::SourceAdaptor::jgi_dbi

in lib/Bio/Das/ProServer/SourceAdaptor/jgi_dbi.pm

Bio::Das::ProServer::SourceAdaptor::mirna

in lib/Bio/Das/ProServer/SourceAdaptor/mirna.pm

Bio::Das::ProServer::SourceAdaptor::mitocheck_oligos

in lib/Bio/Das/ProServer/SourceAdaptor/mitocheck_oligos.pm

Bio::Das::ProServer::SourceAdaptor::mungeonscore

in lib/Bio/Das/ProServer/SourceAdaptor/mungeonscore.pm

Bio::Das::ProServer::SourceAdaptor::pfam

in lib/Bio/Das/ProServer/SourceAdaptor/pfam.pm

Bio::Das::ProServer::SourceAdaptor::pfamAlign

in lib/Bio/Das/ProServer/SourceAdaptor/pfamAlign.pm

Bio::Das::ProServer::SourceAdaptor::pfamFullAlign

in lib/Bio/Das/ProServer/SourceAdaptor/pfamFullAlign.pm

Bio::Das::ProServer::SourceAdaptor::pfamOtherFeatures

in lib/Bio/Das/ProServer/SourceAdaptor/pfamOtherFeatures.pm

Bio::Das::ProServer::SourceAdaptor::pfamSeedAlign

in lib/Bio/Das/ProServer/SourceAdaptor/pfamSeedAlign.pm

Bio::Das::ProServer::SourceAdaptor::pig_ends_all_35

in lib/Bio/Das/ProServer/SourceAdaptor/pig_ends_all_35.pm

Bio::Das::ProServer::SourceAdaptor::proxy

in lib/Bio/Das/ProServer/SourceAdaptor/proxy.pm

Bio::Das::ProServer::SourceAdaptor::simple

in lib/Bio/Das/ProServer/SourceAdaptor/simple.pm

Bio::Das::ProServer::SourceAdaptor::simpledb

in lib/Bio/Das/ProServer/SourceAdaptor/simpledb.pm

Bio::Das::ProServer::SourceAdaptor::simplescore_db

in lib/Bio/Das/ProServer/SourceAdaptor/simplescore_db.pm

Bio::Das::ProServer::SourceAdaptor::snp_Zv4

in lib/Bio/Das/ProServer/SourceAdaptor/snp_Zv4.pm

Bio::Das::ProServer::SourceAdaptor::snp_Zv5

in lib/Bio/Das/ProServer/SourceAdaptor/snp_Zv5.pm

Bio::Das::ProServer::SourceAdaptor::styletest

in lib/Bio/Das/ProServer/SourceAdaptor/styletest.pm

Bio::Das::ProServer::SourceAdaptor::swissprot

in lib/Bio/Das/ProServer/SourceAdaptor/swissprot.pm

Bio::Das::ProServer::SourceAdaptor::team87_designs

in lib/Bio/Das/ProServer/SourceAdaptor/team87_designs.pm

Bio::Das::ProServer::SourceAdaptor::tilepath

in lib/Bio/Das/ProServer/SourceAdaptor/tilepath.pm

Bio::Das::ProServer::SourceAdaptor::upload_euf

in lib/Bio/Das/ProServer/SourceAdaptor/upload_euf.pm

Bio::Das::ProServer::SourceAdaptor::zfish_exons

in lib/Bio/Das/ProServer/SourceAdaptor/zfish_exons.pm

Bio::Das::ProServer::SourceAdaptor::zfmodels_array

in lib/Bio/Das/ProServer/SourceAdaptor/zfmodels_array.pm

Bio::Das::ProServer::SourceAdaptor::zfmodels_est

in lib/Bio/Das/ProServer/SourceAdaptor/zfmodels_est.pm

Bio::Das::ProServer::SourceAdaptor::zfmodels_insmut

in lib/Bio/Das/ProServer/SourceAdaptor/zfmodels_insmut.pm

Bio::Das::ProServer::SourceAdaptor::zfmodels_morpholino

in lib/Bio/Das/ProServer/SourceAdaptor/zfmodels_morpholino.pm

Bio::Das::ProServer::SourceAdaptor::zfmodels_tilling

in lib/Bio/Das/ProServer/SourceAdaptor/zfmodels_tilling.pm

Bio::Das::ProServer::SourceHydra::ppid

in lib/Bio/Das/ProServer/SourceHydra/ppid.pm

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