Changes for version 2.6
- Documentation about data structures in SourceAdaptor.pm
Modules
configuration parsing and hooks
base class for sources
A ProServer transport module for wgetz (SRS web access)
Builds DAS structures from the WTSI instance of PDB database
A runtime factory for B::D::P::SourceAdaptors
A database-backed implementation of B::D::P::SourceHydra
hydra broker for simplescore_db databases
Provides
in lib/Bio/Das/ProServer/SourceAdaptor/CNVDB.pm
in lib/Bio/Das/ProServer/SourceAdaptor/Transport/bioseqio.pm
in lib/Bio/Das/ProServer/SourceAdaptor/Transport/csv.pm
in lib/Bio/Das/ProServer/SourceAdaptor/Transport/dbi.pm
in lib/Bio/Das/ProServer/SourceAdaptor/Transport/ensembl.pm
in lib/Bio/Das/ProServer/SourceAdaptor/Transport/file.pm
in lib/Bio/Das/ProServer/SourceAdaptor/Transport/generic.pm
in lib/Bio/Das/ProServer/SourceAdaptor/Transport/getz.pm
in lib/Bio/Das/ProServer/SourceAdaptor/Transport/mole.pm
in lib/Bio/Das/ProServer/SourceAdaptor/Transport/oracle.pm
in lib/Bio/Das/ProServer/SourceAdaptor/Transport/pfetch.pm
in lib/Bio/Das/ProServer/SourceAdaptor/agp.pm
in lib/Bio/Das/ProServer/SourceAdaptor/all_in_group.pm
in lib/Bio/Das/ProServer/SourceAdaptor/bioseq.pm
in lib/Bio/Das/ProServer/SourceAdaptor/cegg_dbi.pm
in lib/Bio/Das/ProServer/SourceAdaptor/chori_243.pm
in lib/Bio/Das/ProServer/SourceAdaptor/cosmic.pm
in lib/Bio/Das/ProServer/SourceAdaptor/cosmic_genomic.pm
in lib/Bio/Das/ProServer/SourceAdaptor/cosmic_ncbi_35.pm
in lib/Bio/Das/ProServer/SourceAdaptor/decipher.pm
in lib/Bio/Das/ProServer/SourceAdaptor/decipher_cnv.pm
in lib/Bio/Das/ProServer/SourceAdaptor/ens_genexrefs.pm
in lib/Bio/Das/ProServer/SourceAdaptor/ens_ncbi_35_morbid.pm
in lib/Bio/Das/ProServer/SourceAdaptor/ensembl_upload.pm
in lib/Bio/Das/ProServer/SourceAdaptor/ensgenes.pm
in lib/Bio/Das/ProServer/SourceAdaptor/gene_pro_db.pm
in lib/Bio/Das/ProServer/SourceAdaptor/genetarget_db.pm
in lib/Bio/Das/ProServer/SourceAdaptor/genetrap.pm
in lib/Bio/Das/ProServer/SourceAdaptor/grouped_db.pm
in lib/Bio/Das/ProServer/SourceAdaptor/gtfdb.pm
in lib/Bio/Das/ProServer/SourceAdaptor/hs34_20_clone.pm
in lib/Bio/Das/ProServer/SourceAdaptor/hs35_clone.pm
in lib/Bio/Das/ProServer/SourceAdaptor/hugo.pm
in lib/Bio/Das/ProServer/SourceAdaptor/indel_Zv4.pm
in lib/Bio/Das/ProServer/SourceAdaptor/indel_Zv5.pm
in lib/Bio/Das/ProServer/SourceAdaptor/interpro_mole.pm
in lib/Bio/Das/ProServer/SourceAdaptor/jgi_dbi.pm
in lib/Bio/Das/ProServer/SourceAdaptor/mirna.pm
in lib/Bio/Das/ProServer/SourceAdaptor/mitocheck_oligos.pm
in lib/Bio/Das/ProServer/SourceAdaptor/mungeonscore.pm
in lib/Bio/Das/ProServer/SourceAdaptor/pfam.pm
in lib/Bio/Das/ProServer/SourceAdaptor/pfamAlign.pm
in lib/Bio/Das/ProServer/SourceAdaptor/pfamFullAlign.pm
in lib/Bio/Das/ProServer/SourceAdaptor/pfamOtherFeatures.pm
in lib/Bio/Das/ProServer/SourceAdaptor/pfamSeedAlign.pm
in lib/Bio/Das/ProServer/SourceAdaptor/pig_ends_all_35.pm
in lib/Bio/Das/ProServer/SourceAdaptor/proxy.pm
in lib/Bio/Das/ProServer/SourceAdaptor/simple.pm
in lib/Bio/Das/ProServer/SourceAdaptor/simpledb.pm
in lib/Bio/Das/ProServer/SourceAdaptor/simplescore_db.pm
in lib/Bio/Das/ProServer/SourceAdaptor/snp_Zv4.pm
in lib/Bio/Das/ProServer/SourceAdaptor/snp_Zv5.pm
in lib/Bio/Das/ProServer/SourceAdaptor/styletest.pm
in lib/Bio/Das/ProServer/SourceAdaptor/swissprot.pm
in lib/Bio/Das/ProServer/SourceAdaptor/team87_designs.pm
in lib/Bio/Das/ProServer/SourceAdaptor/tilepath.pm
in lib/Bio/Das/ProServer/SourceAdaptor/upload_euf.pm
in lib/Bio/Das/ProServer/SourceAdaptor/zfish_exons.pm
in lib/Bio/Das/ProServer/SourceAdaptor/zfmodels_array.pm
in lib/Bio/Das/ProServer/SourceAdaptor/zfmodels_est.pm
in lib/Bio/Das/ProServer/SourceAdaptor/zfmodels_insmut.pm
in lib/Bio/Das/ProServer/SourceAdaptor/zfmodels_morpholino.pm
in lib/Bio/Das/ProServer/SourceAdaptor/zfmodels_tilling.pm
in lib/Bio/Das/ProServer/SourceHydra/ppid.pm