NAME

Bio::TreeIO::tabtree - A simple output format which displays a tree as an ASCII drawing

SYNOPSIS

use Bio::TreeIO;
my $in = new Bio::TreeIO(-file => 'input', -format => 'newick');
my $out = new Bio::TreeIO(-file => '>output', -format => 'tabtree');

while( my $tree = $in->next_tree ) {
    $out->write_tree($tree);
}

DESCRIPTION

This is a made up format just for outputting trees as an ASCII drawing.

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

http://bugzilla.open-bio.org/

AUTHOR - Jason Stajich

Email jason@bioperl.org

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new

Title   : new
Usage   : my $obj = new Bio::TreeIO::tabtree();
Function: Builds a new Bio::TreeIO::tabtree object 
Returns : Bio::TreeIO::tabtree
Args    :

write_tree

Title   : write_tree
Usage   : $treeio->write_tree($tree);
Function: Write a tree out to data stream in newick/phylip format
Returns : none
Args    : Bio::Tree::TreeI object

next_tree

Title   : next_tree
Usage   : 
Function: Sorry not possible with this format
Returns : none
Args    : none