NAME

tradis_gene_insert_sites - Generate insertion site details from TraDIS pipeline plots

VERSION

version 1.4.1

SYNOPSIS

DESCRIPTION

This script is for TRADIS analysis. It takes in a plot file created by the TRADIS pathogen informatics pipeline, and an embl file of annotation. It then outputs a tab delimited file with the insert site details. This is then used as input to an R script to calculate essentialit y.

NAME

tradis_gene_insert_sites.pl

CONTACT

path-help@sanger.ac.uk Original author: Lars Barquist

METHODS

AUTHOR

Carla Cummins <path-help@sanger.ac.uk>

COPYRIGHT AND LICENSE

This is free software, licensed under:

The GNU General Public License, Version 3, June 2007

To install Bio::Tradis, copy and paste the appropriate command in to your terminal.

cpanm

cpanm Bio::Tradis

CPAN shell

perl -MCPAN -e shell
install Bio::Tradis

For more information on module installation, please visit the detailed CPAN module installation guide.

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NAME

VERSION

SYNOPSIS

DESCRIPTION

NAME

CONTACT

METHODS

AUTHOR

COPYRIGHT AND LICENSE

Module Install Instructions