NAME
Bio::DOOP::DOOP - DOOP API main module
VERSION
Version 0.06
SYNOPSIS
use Bio::DOOP::DOOP;
$db = Bio::DOOP::DBSQL->new("doopuser","dooppass","doop_1_5","localhost");
$cluster = Bio::DOOP::Cluster->new($db,"8010109","500");
@seqs = @{$cluster->get_all_seqs};
foreach $seq (@seqs){
print $seq->seq,"\n";
}
DESCRIPTION
This is a container module for all the DOOP modules.
You can simply use this module to access all DOOP objects.
For more help, please see the documentation of the individual
objects.
AUTHOR
Tibor Nagy, Godollo, Hungary
OBJECTS
Bio::DOOP::DBSQL
Object for simple SQL querys
Bio::DOOP::Cluster
Object for the clusters
Bio::DOOP::ClusterSubset
Object for the set of sequences that is smaller (or equal) than the cluster itself.
Bio::DOOP::Sequence
Object for the cluster (or cluster subset) sequences.
Bio::DOOP::SequenceFeature
Object for the special annotation of the sequences.
Bio::DOOP::Motif
Object for the conserved regulatory elements.
Bio::DOOP::Util::Search
Module for some useful searching subrutine.
COPYRIGHT & LICENSE
Copyright 2006 Tibor Nagy, all rights reserved.
This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself.