NAME
Bio::DOOP::Cluster - Doop cluster object
SYNOPSIS
This object represent the cluster.
Usage:
$cluster = Bio::DOOP::Cluster->new($db,"81007400","500");
print $cluster->get_cluster_id;
AUTHOR
Tibor Nagy, Godollo, Hungary
METHODS
new_by_id
Bio::DOOP::Cluster->new_by_id($db,"2453");
Used by internal MySQL querys
get_id
$cluster_id = $cluster->get_id;
Return with the MySQL id.
get_cluster_id
Return the cluster id
$pt = $cluster->get_promo_type;
Visszaadja a promoter elvi meretet (500,1000,3000 bp elvi meretu lehet)
get_type
print $cluster->get_type;
Visszaadja a promoter tipusat (1,2,3,4,5,6 tipusu lehet az exonok fugvenyeben)
get_date
$date = $cluster->get_date;
Az adatbazisba kerulesenek az idopontja
get_version
print $cluster->get_version;
A cluster verzioszama
get_all_subsets
This is return with all the subsets linked to the cluster
@subsets = @{$cluster->get_all_subsets};
get_all_seqs
@seqs = @{$cluster->get_all_seqs};
Return all the sequences that are linked to the cluster