NAME

Bio::DOOP::DOOP - DOOP API main module

SYNOPSIS

use Bio::DOOP::DOOP;

$db = Bio::DOOP::DBSQL->new("doopuser","dooppass","doop_1_5","localhost");
$cluster = Bio::DOOP::Cluster->new($db,"8010109","500");
@seqs = @{$cluster->get_all_seqs};
foreach $seq (@seqs){
   print $seq->seq,"\n";
}

DESCRIPTION

This is a container module for all the DOOP modules.
You can simply use this module to access all DOOP objects.
For more help, please see the documentation of the individual
objects.

AUTHOR

Tibor Nagy, Godollo, Hungary

OBJECTS

Bio::DOOP::DBSQL

Object for simple SQL querys

Bio::DOOP::Cluster

Object for the clusters

Bio::DOOP::ClusterSubset

Object for the set of sequences that is smaller (or equal) than the cluster itself.

Bio::DOOP::Sequence

Object for the cluster (or cluster subset) sequences.

Bio::DOOP::SequenceFeature

Object for the special annotation of the sequences.

Bio::DOOP::Motif

Object for the conserved regulatory elements.

Bio::DOOP::Util::Search

Module for some useful searching subrutine.