NAME

App::Fasops - operating blocked fasta files

SYNOPSIS

fasops <command> [-?h] [long options...]
    -? -h --help    show help

Available commands:

  commands: list the application's commands
      help: display a command's help screen

   axt2fas: convert axt to blocked fasta
    covers: scan blocked fasta files and output covers on chromosomes
      join: join multiple blocked fasta files by common target
     links: scan blocked fasta files and output bi/multi-lateral range links
   maf2fas: convert maf to blocked fasta
     names: scan blocked fasta files and output all species names
    refine: realign blocked fasta file with external programs
   replace: replace headers from a blocked fasta
  separate: separate blocked fasta files by species
     slice: extract alignment slices from a blocked fasta
     split: split blocked fasta files to separate per-alignment files
    subset: extract a subset of species from a blocked fasta
      xlsx: paint substitutions and indels to an excel file

See fasops commands for usage information.

AUTHOR

Qiang Wang <wang-q@outlook.com>

COPYRIGHT AND LICENSE

This software is copyright (c) 2014 by Qiang Wang.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.