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Bio-ExtractNE-1.03

Changes for version 1.03 - 2004-10-16

  • Creating dict on the fly instead of prebuilding
  • Added $USE_SHORTEST in ExtractNE.pm
  • Added data/dict.src

Documentation

bene.pl
A command-line tool for Bio::ExtractNE

Modules

Bio::ExtractNE
Extract biological named entities from PUBMED abstracts
Bio::ExtractNE::Events
Detect interaction events in text
Bio::ExtractNE::GAPSCORE_RPC
Class for accessing GAPSCORE RPC service
Bio::ExtractNE::GetAbst
Fetch abstracts from PUBMED
Bio::ExtractNE::GetSprot
Fetch Full SwissProt Data
Bio::ExtractNE::MakeDict
Package for creating dictionary

Provides

Bio::ExtractNE::CommonWords
in lib/Bio/ExtractNE/CommonWords.pm
Bio::ExtractNE::Dict
in lib/Bio/ExtractNE/Dict.pm
Bio::ExtractNE::EventPattern
in lib/Bio/ExtractNE/EventPattern.pm
Bio::ExtractNE::Filter
in lib/Bio/ExtractNE/Filter.pm
Bio::ExtractNE::GAPSCORE
in lib/Bio/ExtractNE/GAPSCORE.pm
Bio::ExtractNE::GAPSCORE::AbbreviationMatcher::AbbreviationAligner
in lib/Bio/ExtractNE/GAPSCORE/AbbreviationMatcher/AbbreviationAligner.pm
Bio::ExtractNE::GAPSCORE::AbbreviationMatcher::AbbreviationCandidateFinder
in lib/Bio/ExtractNE/GAPSCORE/AbbreviationMatcher/AbbreviationCandidateFinder.pm
Bio::ExtractNE::GAPSCORE::FullNameExtender
in lib/Bio/ExtractNE/GAPSCORE/FullNameExtender.pm
Bio::ExtractNE::GAPSCORE::Scorer
in lib/Bio/ExtractNE/GAPSCORE/Scorer.pm
Bio::ExtractNE::GAPSCORE::Scorer::GeneralCase
in lib/Bio/ExtractNE/GAPSCORE/Scorer/GeneralCase.pm
Bio::ExtractNE::GAPSCORE::Scorer::GeneralCase::Appearance
in lib/Bio/ExtractNE/GAPSCORE/Scorer/GeneralCase/Appearance.pm
Bio::ExtractNE::GAPSCORE::Scorer::GeneralCase::Appearance::GeneName
in lib/Bio/ExtractNE/GAPSCORE/Scorer/GeneralCase/Appearance/GeneName.pm
Bio::ExtractNE::GAPSCORE::Scorer::GeneralCase::Appearance::GeneSymbol
in lib/Bio/ExtractNE/GAPSCORE/Scorer/GeneralCase/Appearance/GeneSymbol.pm
Bio::ExtractNE::GAPSCORE::Scorer::GeneralCase::Classifier
in lib/Bio/ExtractNE/GAPSCORE/Scorer/GeneralCase/Classifier.pm
Bio::ExtractNE::GAPSCORE::Scorer::SpecialCase
in lib/Bio/ExtractNE/GAPSCORE/Scorer/SpecialCase.pm
Bio::ExtractNE::GAPSCORE::Scorer::SpecialCase::EnzymeMatcher
in lib/Bio/ExtractNE/GAPSCORE/Scorer/SpecialCase/EnzymeMatcher.pm
Bio::ExtractNE::GAPSCORE::Scorer::SpecialCase::P450Matcher
in lib/Bio/ExtractNE/GAPSCORE/Scorer/SpecialCase/P450Matcher.pm
Bio::ExtractNE::GAPSCORE::TokenFilter
in lib/Bio/ExtractNE/GAPSCORE/TokenFilter.pm
Bio::ExtractNE::GAPSCORE::TokenFilter::POSFilter
in lib/Bio/ExtractNE/GAPSCORE/TokenFilter/POSFilter.pm
Bio::ExtractNE::GAPSCORE::TokenFilter::PatternFilter
in lib/Bio/ExtractNE/GAPSCORE/TokenFilter/PatternFilter.pm
Bio::ExtractNE::GAPSCORE::TokenFilter::SpecificWordFilter
in lib/Bio/ExtractNE/GAPSCORE/TokenFilter/SpecificWordFilter.pm
Bio::ExtractNE::GAPSCORE::TokenStreamBuilder
in lib/Bio/ExtractNE/GAPSCORE/TokenStreamBuilder.pm
Bio::ExtractNE::GAPSCORE::TokenStreamBuilder::SentenceSpliter
in lib/Bio/ExtractNE/GAPSCORE/TokenStreamBuilder/SentenceSpliter.pm
Bio::ExtractNE::GAPSCORE::TokenStreamBuilder::Tokenizer
in lib/Bio/ExtractNE/GAPSCORE/TokenStreamBuilder/Tokenizer.pm
Bio::ExtractNE::HandPicked
in lib/Bio/ExtractNE/HandPicked.pm
Bio::ExtractNE::Recognizer
in lib/Bio/ExtractNE/Recognizer.pm
Bio::ExtractNE::SplitSentence
in lib/Bio/ExtractNE/SplitSentence.pm
Bio::ExtractNE::Stoplist
in lib/Bio/ExtractNE/Stoplist.pm
Bio::ExtractNE::Tokenize
in lib/Bio/ExtractNE/Tokenize.pm
Bio::ExtractNE::Vars
in lib/Bio/ExtractNE/Vars.pm

Other files