NAME

Bio::Tools::FuzzyHypercube - Fuzzy Hypercube of sequence

SYNOPSIS

use Bio::Tools::FuzzyHypercube;
my $cubeA = Bio::Tools::FuzzyHypercube->new('ACGGCGCTGCACGTGACG');
my $cubeB = Bio::Tools::FuzzyHypercube->new('GCGCGGAGAGTTTTGCCA');

print @$cubeA;
print @$cubeB;

print $cubeA->dist($cubeB);

DESCRIPTION

Fuzzy Hypercube is an idea proposed for estimating difference between two sequences. For details, see The fuzzy polynucleotide space: basic properties written by Angela Torres and Juan J. Nieto published in Bioinformatics Journal

The interface is simple. Make two cubes, and calculate the distance between them, as shown in SYNOPSIS.

COPYRIGHT

xern <xern@cpan.org>

This module is free software; you can redistribute it or modify it under the same terms as Perl itself.