Changes for version 0.213470 - 2021-12-14
- Additions
- 42: New command-line option --outdir in debrief-42.pl and yaml-generator-42.pl
- 42: New script prune-outliers.pl (aka clean-OGs.pl)
- Fixes
- 42: Fixed bug where merge_orthologues: on was not honored if ref_brf: off
- 42: Removed repeated loading of NCBI Taxonomy in multithreading mode
Documentation
Post-process assembler for transcript enrichment using 42
Summarize the results of a 42 metagenomic run
The Answer to the Ultimate Question of Phylogenomics
The Elite of the Phylogenomic Back-Translators
Identify and discard outliers based on all-versus-all BLAST searches
Interactive or batch generator for 42 YAML config files
User Guide for Forty-Two
Modules
Main class for debrief-42 tool
Internal class for tabular tax-report parser
Internal class for tabular tax-report parser
Front-end class for tabular tax-report parser
Internal class for tabular tax-report parser
Main class for forty-two tool
Internal class for forty-two tool
Internal class for forty-two tool
Internal class for forty-two tool
Main class for leel tool
Internal class for leel tool
Internal class for leel tool
Internal class for leel tool
Attributes and methods common to AliProcessor objects
Attributes and methods common to Leel and FortyTwo objects
Attributes and methods common to OrgProcessor objects
Attributes and methods common to RunProcessor objects
Internal class for slave-aligner