Changes for version 0.252040 - 2025-07-23
- Additions
- lib/binaries: new option --max-hits to truncate long reports
- lib/binaries: new option --skip-config to filter out reports on a taxonomic basis
- Changes
- binaries: improved Euclid documentation and error handling
- binaries: most taxonomic warnings are now silenced to reduce interactive clutter
- Parsable: hits with undetermined taxonomy are now explicitly flagged MISSING
- Fixes
- Blast: worked around change in XML report (hit id vs hit definition)
- Parsable: tests should now be more robust
Documentation
Extract seqs from BLAST/HMMER interactively or in batch mode
Modules
Main class for ompa-pa tool
internal class for XML BLAST parser
internal class for tabular HMMER parser
Internal class for serializing user-selected parameters
Parsable Moose role for search report objects
Distribution-wide Moose types for Bio::MUST::Apps::OmpaPa