NAME

FAST::Bio::Seq::SeqFastaSpeedFactory - Instantiates a new FAST::Bio::PrimarySeqI (or derived class) through a factory

SYNOPSIS

            

              
              
use FAST::Bio::Seq::SeqFastaSpeedFactory;
my $factory = FAST::Bio::Seq::SeqFastaSpeedFactory->new();
my $seq = $factory->create(-seq => 'WYRAVLC',
      -id  => 'name');
# If you want the factory to create FAST::Bio::Seq objects instead
# of the default FAST::Bio::PrimarySeq objects, use the -type parameter:
my $factory = FAST::Bio::Seq::SeqFastaSpeedFactory->new(-type => 'FAST::Bio::Seq');
            
          

DESCRIPTION

This object will build FAST::Bio::Seq objects generically.

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

            

              
              
bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
            
          

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

            

              
              
https://redmine.open-bio.org/projects/bioperl/
            
          

AUTHOR - Jason Stajich

Email jason@bioperl.org

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new

            

              
              
Title   : new
Usage   : my $obj = FAST::Bio::Seq::SeqFastaSpeedFactory->new();
Function: Builds a new FAST::Bio::Seq::SeqFastaSpeedFactory object 
Returns : FAST::Bio::Seq::SeqFastaSpeedFactory
Args    : -type => string, name of a PrimarySeqI derived class
                   This is optional. Default=FAST::Bio::PrimarySeq.
            
          

create

            

              
              
Title   : create
Usage   : my $seq = $seqbuilder->create(-seq => 'CAGT', -id => 'name');
Function: Instantiates a new FAST::Bio::Seq object, correctly built but very
          fast, knowing stuff about FAST::Bio::PrimarySeq and FAST::Bio::Seq
Returns : FAST::Bio::Seq
Args    : initialization parameters specific to the type of sequence
          object we want.  Typically 
          -seq        => $str,
          -id         => $name