Changes for version 0.5.0 - 2007-03-23

  • POD improvements
  • different values for upstream and downstream in GUUGle
  • did not throw an exception if alphabet file was missing
  • database generation in bgrep broken
  • more tests

Documentation

Wrapper for several suffix array tools

Modules

Perl extension for searching in Fasta files
Superclass for all back-ends
GUUGle back-end
Vmatch back-end
Data structure for a back-end search hit
Data structure for all search settings
Superclass for all filter modules
Superclass for all Bio::Grep* packages