NAME

Bio::Polloc::Rule::crispr - A rule of type CRISPR

DESCRIPTION

Runs CRISPRFinder to search CRISPRs

AUTHOR - Luis M. Rodriguez-R

Email lmrodriguezr at gmail dot com

APPENDIX

Methods provided by the package

execute

Runs CRIPRRfinder and parses the output.

Arguments

-seq Bio::Seq or Bio::SeqIO obj

The sequence(s).

Returns

An array reference populated with Bio::Polloc::Locus::repeat objects

stringify_value

Stringifies the requested value

INTERNAL METHODS

Methods intended to be used only within the scope of Bio::Polloc::*

_parameters

_qualify_value

Implements the _qualify_value() from the Bio::Polloc::RuleI interface

Arguments

Value (str or ref-to-hash or ref-to-array). The supported keys are:

-ignoreprobable

Should I ignore the 'ProbableCrispr' results?

Return

Value (ref-to-hash or undef)

_initialize