Changes for version 1.5.3 - 2023-01-12
- Refactoring test suite (TestFu.pm)
- Updated binaries to uniformly load library and use the unblessed method getRead()
Documentation
Concatenate FASTA or FASTQ files
Find the common sequences between two files
A FASTA/FASTQ sequence counter
Get sequences by name (also using lists)
Extract sequences using patterns
Print sequence hashes
A demo implementation to filter fastx files by length
rename sequences
Sort sequences by size
Dereplicate sequences
A script to calculate N50 from one or multiple FASTA/FASTQ files.
Modules
a small module to calculate N50 (total size, and total number of sequences) for a FASTA or FASTQ file. It's easy to install, with minimal dependencies.
Helper module to support Seqfu tools