Changes for version 0.05702
- that upload was a bit TOO clean, was missing the Build.PL!
Documentation
For describing cell lines
Augments sequence module with descriptions of computational analyses and features resulting from those analyses
A collection of bridge codes that have multiple dependancies so they don't happily go where is most obvious
model persons, institutes, groups, organizations, etc
Controlled vocabularies and ontologies
transcript or protein expression data
General purpose tables, including dbxrefs
Genotypes and mutant alleles
For describing molecular libraries
Alternative expression module, based on MAGE model
Non-sequence maps: genetic, radiation hybrid, cytogenetic, etc
Species data - does not include phylogeny
Entity-attribute-value phenotypic character descriptions
For representing phylogenetic trees; the trees represent the phylogeny of some some kind of sequence feature (mainly proteins) or actual organism taxonomy trees
Bibliographic data on publications
Sequence and sequence features, their localization and properties
For tracking stock collections
utility functions shared by Bio::Chado::Schema objects
developer-only maintenance script to sync this DBIx::Class object layer with the latest upstream version of Chado
Modules
standard DBIx::Class layer for the Chado database schema
featurelocs do not meet. symmetric
Model persons, institutes, groups, organizations, etc.
Model relationships between contacts
per-cv terms counts (excludes obsoletes)
per-cv terms counts (includes obsoletes)
The expression table is essentially a bridge table.
per-db dbxref counts
The environmental component of a phenotype description.
Parameters associated with image acquisition.
Link assays to projects.
Extra assay properties that are not accounted for in assay.
Procedural notes on how data was prepared and processed.
Tag-value properties - follows standard chado model.
Global anchor for phylogenetic tree.
Property or attribute of a feature_pub link.
Provenance for feature_relationshipprop.
Linking table between feature and synonym.
per-feature-type feature counts
Provides
in lib/Bio/Chado/Schema/Cv/Cvterm.pm
in lib/Bio/Chado/Schema/Sequence/Cvtermsynonym.pm
in lib/Bio/Chado/Schema.pm