NAME

Bio::Chado::Schema::Companalysis::Analysis

DESCRIPTION

An analysis is a particular type of a computational analysis; it may be a blast of one sequence against another, or an all by all blast, or a different kind of analysis altogether. It is a single unit of computation.

ACCESSORS

analysis_id

data_type: integer
default_value: nextval('analysis_analysis_id_seq'::regclass)
is_auto_increment: 1
is_nullable: 0

name

data_type: character varying
default_value: undef
is_nullable: 1
size: 255

A way of grouping analyses. This should be a handy short identifier that can help people find an analysis they want. For instance "tRNAscan", "cDNA", "FlyPep", "SwissProt", and it should not be assumed to be unique. For instance, there may be lots of separate analyses done against a cDNA database.

description

data_type: text
default_value: undef
is_nullable: 1

program

data_type: character varying
default_value: undef
is_nullable: 0
size: 255

Program name, e.g. blastx, blastp, sim4, genscan.

programversion

data_type: character varying
default_value: undef
is_nullable: 0
size: 255

Version description, e.g. TBLASTX 2.0MP-WashU [09-Nov-2000].

algorithm

data_type: character varying
default_value: undef
is_nullable: 1
size: 255

Algorithm name, e.g. blast.

sourcename

data_type: character varying
default_value: undef
is_nullable: 1
size: 255

Source name, e.g. cDNA, SwissProt.

sourceversion

data_type: character varying
default_value: undef
is_nullable: 1
size: 255

sourceuri

data_type: text
default_value: undef
is_nullable: 1

This is an optional, permanent URL or URI for the source of the analysis. The idea is that someone could recreate the analysis directly by going to this URI and fetching the source data (e.g. the blast database, or the training model).

timeexecuted

data_type: timestamp without time zone
default_value: now()
is_nullable: 0

RELATIONS

analysisfeatures

Type: has_many

Related object: Bio::Chado::Schema::Companalysis::Analysisfeature

analysisprops

Type: has_many

Related object: Bio::Chado::Schema::Companalysis::Analysisprop

phylotrees

Type: has_many

Related object: Bio::Chado::Schema::Phylogeny::Phylotree

quantifications

Type: has_many

Related object: Bio::Chado::Schema::Mage::Quantification

cpanm Bio::Chado::Schema

perl -MCPAN -e shell
install Bio::Chado::Schema