Changes for version 0.210370 - 2021-02-06
- Additions
- 42/1331: New command-line option --outdir to control output location
- 42: New script (still in development) for debriefing metagenomic runs of 42
- 1331: Support for basic multithreading (--threads command-line option)
- Fixes
- 42: Fixed minor bugs in yaml-generator-42.pl
- 42: Made user tests more robust by only calling BLAST by default
- 1331: Restored broken function due to regression bug
Documentation
Post-process assembler for transcript enrichment using 42
[UNSTABLE] Summarize the results of a 42 metagenomic run
The Answer to the Ultimate Question of Phylogenomics
The Elite of the Phylogenomic Back-Translators
Interactive or batch generator for 42 YAML config files
User Guide for Forty-Two
Modules
Main class for debrief-42 tool
Internal class for tabular tax-report parser
Internal class for tabular tax-report parser
Front-end class for tabular tax-report parser
Internal class for tabular tax-report parser
Main class for forty-two tool
Internal class for forty-two tool
Internal class for forty-two tool
Internal class for forty-two tool
Main class for leel tool
Internal class for leel tool
Internal class for leel tool
Internal class for leel tool
Attributes and methods common to AliProcessor objects
Attributes and methods common to Leel and FortyTwo objects
Attributes and methods common to OrgProcessor objects
Attributes and methods common to RunProcessor objects
Internal class for slave-aligner